Help

Direct Deposit for Organizations


Configuring direct deposit for your organization is an essential step to automate salary and tax payments.

NOTE To automate salary payments to your employees, you need to configure direct deposit for your employees as well.

Once you complete the setup and approve a payroll, your bank account will be debited the following amounts:

Debit Amount Deposited To
Net pay of employees whose payment mode is Direct Deposit The employees’ bank accounts
Federal, state, and local tax amounts The corresponding tax authorities
Child support garnishment amounts, if applicable The corresponding child support agency

Direct Deposit can be configured for your organization in three simple and straightforward steps:

  1. Add Bank Information
  2. Bank Account Verification (handled by Zoho Payroll)
  3. Authorize Payment Service Provider

Add Bank Information

To add your organization’s bank information:

  1. Go to Settings and navigate to Direct Deposit.
  2. Click Configure Now.

Configure Direct Deposit in Zoho Payroll

  1. Provide the required details:
Field Name Description
Bank Account Name Enter the name of your bank account.
Bank Name Enter the name of the bank.
Account Number Enter your bank account number.
Routing Number Enter the nine digit routing number of your bank.
Account Code Enter a unique code for your bank account.
Account Type Select the type of bank account:
  • Checking
  • Savings

Add Bank Information to Configure Direct Deposit

  1. Click Add.

Bank Account Verification

After adding your bank account, Zoho Payroll will automatically initiate a verification process to ensure the correctness of the provided information.

This automated process typically takes 2 to 3 business days.

For more details on the verification process, refer to our help document on Bank Account Verification.


Authorize Payment Service Provider

PREREQUISITE Authorization will only be available after completing the following steps:

NOTE The authorization process must be completed by either the business owner or an authorized person who is responsible for signing legal documents on behalf of your organization.

To authorize your payment service provider:

  1. Click Authorize.

Authorize Payment Service Provider

  1. In the popup, verify your details for accuracy and click Proceed.

Proceed to Authorize Payment Service Provider

  1. Review the authorization terms and click Authorize.

Review and Authorize Payment Service Provider

Your payment service provider will then be authorized.


This completes the Direct Deposit configuration for your organization. You can now configure Direct Deposit for your employees and process payrolls.

Things to Remember

  • Once a payroll is approved, it takes about 4 business days for payments to be processed. Ensure you approve payroll 4 business days before the pay date.
  • Before approving payroll, make sure your organization’s bank account has sufficient funds to cover employee salaries and tax liabilities.
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